PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g26190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 901aa    MW: 99041.7 Da    PI: 6.2535
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g26190genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.4e-24129230199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  Tp1g26190 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLL 224
                99*****************************8544444..48************************************************..7888889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  Tp1g26190 225 LGIRRA 230
                ***997 PP

2Auxin_resp117.61e-38255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rW nS+Wrs+k
   Tp1g26190 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPARWANSHWRSVK 338
                 79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-20128229No hitNo description
PfamPF023624.9E-22129230IPR003340B3 DNA binding domain
SMARTSM010191.9E-24129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464129231IPR003340B3 DNA binding domain
PfamPF065079.1E-34255338IPR010525Auxin response factor
PfamPF023092.9E-8750851IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-7753837No hitNo description
PROSITE profilePS5174524.173762846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV  120
PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ICDLDPARWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMGMSS PLMWDRGLQS LNFQGMGVNP  420
WMQPRLDASD LLGMQNDVYH AMAAAALQDM RGIDPAKAAA SLLQFENPSG FSMPSPSLVQ  480
PQMLQQQLSQ QQQQQLSQQQ QQAYLGIPET HQSQAQSQSN NLLSQQQQQQ QVAVNHNPSA  540
SGAAVVSAMS QFGSASESNT APLQSMTSLC HQQSFSDTNG GNNTISPLHT LLSNFSQDES  600
SQLLNLTRTN SAMTSSGWPS KRPAVDSSFQ HSGAGNNNTQ SVMEQLGQSH TSNVPPNAVS  660
LPPFPGGREC SIEQEGSASD PHSHLLFGVN IDSSSLLMPN GMSNLRSIGM EGGDSTTLPF  720
TSSNFNNDFS GNLAMTTPSS CIDESGFLQS SENLGSENQQ SNTFVKVYKS GSFGRSLDIS  780
KFSSYHELRS ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP EFVSSVWCIK  840
ILSPQEVQQM GKRGLELLNS APSSNNVDKL PSNGNCDDFG NRSDPRNLGN GIASVGGSFN  900
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591835947388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6697880.0AY669788.1 Arabidopsis thaliana clone C105343 ARF6 (At1g30330) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415485.10.0hypothetical protein EUTSA_v10006747mg
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLV4L2540.0V4L254_EUTSA; Auxin response factor
STRINGAT1G30330.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6